Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs80031516 chr5:26035637 T/C 1.63E-5 364 19.5 20.65 1.03 KM Plot
LIHC rs80041721 chr5:147024896 G/T 1.74E-5 366 20.03 16.2 4.25 KM Plot
LIHC rs80114444 chr6:169939774 G/A 1.73E-5 366 19.87 18.8 4.27 KM Plot
LIHC rs8012220 chr14:60338522 C/A 2.08E-5 365 19.43 22.4 8.82 KM Plot
LIHC rs80174436 chr6:169971230 C/G 1.37E-5 365 19.8 18.97 4.27 KM Plot
LIHC rs80293812 chr6:169948343 G/A 1.79E-5 366 19.87 18.8 4.27 KM Plot
LIHC rs80309070 chr2:37100634 C/G 1.23E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs8033050 chr15:82561989 G/A 4.43E-5 360 14.33 22 19.13 KM Plot
LIHC rs8068934 chr17:7440726 A/G 1.51E-7 368 1.73 19.78 19.6 KM Plot
LIHC rs8179791 chr2:129056917 T/C 2.2E-5 363 18.53 20.6 18.7 KM Plot
LIHC rs840891 chr2:129062290 G/T 3.88E-5 360 18.77 20.5 18.6 KM Plot
LIHC rs875958 chr14:95028667 A/T 6.69E-5 358 16.87 26.03 21.13 KM Plot
LIHC rs882732 chr14:95027722 G/A 6.21E-5 359 17.18 26.07 21.13 KM Plot
LIHC rs884977 chr7:1066410 T/C 4.85E-6 359 19.87 20.07 1.73 KM Plot
LIHC rs885974 chr7:90299311 T/G 2.22E-5 362 14.32 19.42 20.78 KM Plot